Merge branch 'dev' into 'main'
v1.12a See merge request !18
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- .gitlab-ci.yml 1 addition, 1 deletion.gitlab-ci.yml
- README.md 2 additions, 1 deletionREADME.md
- Snakefile 311 additions, 180 deletionsSnakefile
- config.yaml 7 additions, 5 deletionsconfig.yaml
- data/.gitkeep 0 additions, 0 deletionsdata/.gitkeep
- example/config_CICD.yaml 4 additions, 1 deletionexample/config_CICD.yaml
- rules/tools.smk 31 additions, 0 deletionsrules/tools.smk
- scripts/chrInputStats.py 3 additions, 0 deletionsscripts/chrInputStats.py
- scripts/chrStatsAggregation.py 2 additions, 0 deletionsscripts/chrStatsAggregation.py
- scripts/contig_position.R 39 additions, 8 deletionsscripts/contig_position.R
- scripts/coreStats.py 5 additions, 0 deletionsscripts/coreStats.py
- scripts/getPanacusHG.sh 1 addition, 1 deletionscripts/getPanacusHG.sh
- scripts/getSyriFigs.sh 33 additions, 8 deletionsscripts/getSyriFigs.sh
- scripts/ragtagChromInfer.sh 3 additions, 3 deletionsscripts/ragtagChromInfer.sh
- scripts/syri_pruning.py 2 additions, 0 deletionsscripts/syri_pruning.py
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