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Alexis Mergez authored
Added wfmash and samtools
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.gitlab-ci.yml
GFAvc.py
PanGeTools.def
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PanGeTools

Apptainer container containing useful tools for pangenomics analysis. Versions of tools is reported in the definition file, in the help section.

Add the following function to your bashrc to have easier commands :

# Folder containing apptainer images (.sif)
apptainerpath="<path_to_apptainer_folder>"

# Function to easly run PanGeTools.
# The command is PanGeTools <tool name> <tool args>
PanGeTools() {
    apptainer run --app $1 $apptainerpath/PanGeTools.sif "${@:2}"
}