Merge branch 'dev' into 'main'
Merge for version 1.0.0 See merge request !1
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- .config/masterconfig.yaml 40 additions, 22 deletions.config/masterconfig.yaml
- README.md 34 additions, 26 deletionsREADME.md
- job.sh 4 additions, 2 deletionsjob.sh
- prejob.sh 1 addition, 1 deletionprejob.sh
- workflow/Snakefile 80 additions, 81 deletionsworkflow/Snakefile
- workflow/modules/merqury_trio.smk 0 additions, 137 deletionsworkflow/modules/merqury_trio.smk
- workflow/modules/purged_stats.smk 0 additions, 33 deletionsworkflow/modules/purged_stats.smk
- workflow/rules/01_qc.smk 82 additions, 0 deletionsworkflow/rules/01_qc.smk
- workflow/rules/02_asm.smk 95 additions, 0 deletionsworkflow/rules/02_asm.smk
- workflow/rules/03.5_A_qc_merqury.smk 129 additions, 0 deletionsworkflow/rules/03.5_A_qc_merqury.smk
- workflow/rules/03_asm_qc.smk 68 additions, 0 deletionsworkflow/rules/03_asm_qc.smk
- workflow/rules/04_purge_dups.smk 17 additions, 13 deletionsworkflow/rules/04_purge_dups.smk
- workflow/rules/05.5_PA_qc_merqury.smk 96 additions, 0 deletionsworkflow/rules/05.5_PA_qc_merqury.smk
- workflow/rules/05_purged_asm_qc.smk 44 additions, 0 deletionsworkflow/rules/05_purged_asm_qc.smk
- workflow/rules/06_sym_link_hap.smk 10 additions, 0 deletionsworkflow/rules/06_sym_link_hap.smk
- workflow/rules/07_report.smk 124 additions, 0 deletionsworkflow/rules/07_report.smk
- workflow/rules/README.md 49 additions, 0 deletionsworkflow/rules/README.md
- workflow/rules/busco.smk 0 additions, 19 deletionsworkflow/rules/busco.smk
- workflow/rules/fastqc.smk 0 additions, 15 deletionsworkflow/rules/fastqc.smk
- workflow/rules/find_telomeres.smk 0 additions, 20 deletionsworkflow/rules/find_telomeres.smk
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