Commits · master · UMR GDEC / magatt

Nov 08, 2024
- Update run_pipeline.md : cluster_config.json deprecated · 5e4d484f
  Helene Rimbert authored 4 months ago
  
  5e4d484f
- Update run_pipeline.md : remove conda options to run the pipeline (deprecated) · 30ee3332
  Helene Rimbert authored 4 months ago
  
  30ee3332
- Update install.md · 7cdac549
  Helene Rimbert authored 4 months ago
  
  7cdac549
- update doc with BED isbps · 4584426e
  Helene Rimbert authored 4 months ago
  
  4584426e
Jan 30, 2024
- ignore bfg report files · 76ab458e
  Helene Rimbert authored 1 year ago
  
  76ab458e
- Delete .gitattributes · 7fcf6021
  Helene Rimbert authored 1 year ago
  
  7fcf6021
- LFS: remove test_data.tar.gz from lfs tracking · 1bf1dea5
  Helene Rimbert authored 1 year ago
  
  Former-commit-id: 07da010d9de944569ea86e9efbb07f13b1d0f5d7
  1bf1dea5
- UPDATE: remove singularity and update gitignore · 1c99cb36
  Helene Rimbert authored 1 year ago
  
  Former-commit-id: 5bb6b07931785485d4dee01777bf248c0bee8b05
  1c99cb36
- UPDATE: test data URL added into readme and sphinx-doc · 74b663f1
  Helene Rimbert authored 1 year ago
  
  Former-commit-id: caf3e88acaef5bfdd4f70bf2e518ac13739a1835
  74b663f1
- remove tar.gz from classic tracked files · de7529dd
  Helene Rimbert authored 1 year ago
  
  Former-commit-id: 1496f5ff1a50a5a121af861fa417fe74ec8f052d
  de7529dd
- Dockerfile ok and smk rules with container pragma · f3035ebd
  Helene Rimbert authored 1 year ago
  
  Former-commit-id: 503e1538132a4683c96bbb1600f35c73a947758d
  f3035ebd
Jan 25, 2024
- Update: update rules with container path for singularity/docker · 52494f0d
  Helene Rimbert authored 1 year ago
  
  52494f0d
- Merge branch 'testData' into 'master' · fde52600
  Helene Rimbert authored 1 year ago
  
  Test data See merge request !14
  fde52600
- TEST: updated test data archive and test_config.yaml · 864eb955
  Helene Rimbert authored 1 year ago
  
  864eb955
- Added .gitattributes to capture LFS tracking · ff434d02
  Helene Rimbert authored 1 year ago
  
  ff434d02
- LFS: add test data.tar.gz archive to LFS · 6ac56344
  Helene Rimbert authored 1 year ago
  
  6ac56344
- NEW: cluster profile added for compatibility with snakemake v6+ · c76ea2b9
  Helene Rimbert authored 1 year ago
  
  c76ea2b9
- clean snakemake rule files · d1e6085f
  Helene Rimbert authored 1 year ago
  
  d1e6085f
Jan 18, 2024
- Merge branch '9-sphinx-customisation' into 'master' · 9fc47878
  Helene Rimbert authored 1 year ago
  
  Update 7 files See merge request !12
  9fc47878
- test with alpine image rather than registry image · 651d6a45
  Helene Rimbert authored 1 year ago
  
  651d6a45
Jan 12, 2024
- Update file run_pipeline.md · 44ec32b9
  Helene Rimbert authored 1 year ago
  
  44ec32b9
- DOCS: remove absolut path from doc and examples · 383b3c1f
  Helene Rimbert authored 1 year ago
  
  383b3c1f
- Update file index.rst · f6fdbc83
  Helene Rimbert authored 1 year ago
  
  f6fdbc83
- Update file index.rst · 8a5c1198
  Helene Rimbert authored 1 year ago
  
  8a5c1198
- Update 2 files · 00b90a8c
  Helene Rimbert authored 1 year ago
  
  - /docs/source/pipeline_conf.md - /docs/index.rst
  00b90a8c
- Update file pipeline_conf.md · 0a0acaa2
  Helene Rimbert authored 1 year ago
  
  0a0acaa2
- Update file conf.py · db513f95
  Helene Rimbert authored 1 year ago
  
  db513f95
- Update 7 files · 7dfc089b
  Helene Rimbert authored 1 year ago
  
  - /cluster-sibi.json - /env.yaml - /docs/source/pipeline_conf.md - /docs/source/run_pipeline.md - /docs/index.rst - /Singularity - /envs/magatt.yaml
  7dfc089b
- Update file README.md · d47440a6
  Helene Rimbert authored 1 year ago
  
  d47440a6
- Update file conf.py · 50c5acf9
  Helene Rimbert authored 1 year ago
  
  50c5acf9
- Update file conf.py · 36430dc3
  Helene Rimbert authored 1 year ago
  
  36430dc3
- Update conf.py · 45e96dd3
  Helene Rimbert authored 1 year ago
  
  45e96dd3
- Update conf.py · 4f62100a
  Helene Rimbert authored 1 year ago
  
  4f62100a
- Merge branch '8-sphinx_doc' into 'master' · 9cce16c1
  Helene Rimbert authored 1 year ago
  
  8 sphinx doc See merge request !11
  9cce16c1
- Add CHANGELOG · 83f1f3a7
  Helene Rimbert authored 1 year ago
  
  83f1f3a7
- CICD: update path to markdown file · 7d3c0456
  Helene Rimbert authored 1 year ago
  
  7d3c0456
Jan 11, 2024
- Readme: add pages url · d5de900b
  Helene Rimbert authored 1 year ago
  
  d5de900b
- CICD: add source venv · 9fdbb548
  Helene Rimbert authored 1 year ago
  
  9fdbb548
- CICD: try to run test script with sphinx-build --help command · 9717cec0
  Helene Rimbert authored 1 year ago
  
  9717cec0
- CICD: deploy Docker for ci and gitlab-ci.yml · 5873bdcc
  Helene Rimbert authored 1 year ago
  
  5873bdcc